Mauve assembly metrics

83Citations
Citations of this article
287Readers
Mendeley users who have this article in their library.

This article is free to access.

Abstract

Summary: High-throughput DNA sequencing technologies have spurred the development of numerous novel methods for genome assembly. With few exceptions, these algorithms are heuristic and require one or more parameters to be manually set by the user. One approach to parameter tuning involves assembling data from an organism with an available high-quality reference genome, and measuring assembly accuracy using some metrics.We developed a system to measure assembly quality under several scoring metrics, and to compare assembly quality across a variety of assemblers, sequence data types, and parameter choices. When used in conjunction with training data such as a high-quality reference genome and sequence reads from the same organism, our program can be used to manually identify an optimal sequencing and assembly strategy for de novo sequencing of related organisms. © The Author(s) 2011. Published by Oxford University Press.

Cite

CITATION STYLE

APA

Darling, A. E., Tritt, A., Eisen, J. A., & Facciotti, M. T. (2011). Mauve assembly metrics. Bioinformatics, 27(19), 2756–2757. https://doi.org/10.1093/bioinformatics/btr451

Register to see more suggestions

Mendeley helps you to discover research relevant for your work.

Already have an account?

Save time finding and organizing research with Mendeley

Sign up for free