Cigarette smoke induces C/EBP-β-mediated activation of mir-31 in normal human respiratory epithelia and lung cancer cells

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Abstract

Background: Limited information is available regarding mechanisms by which MIRNAS contribute to pulmonary carcinogenesis. The present study was undertaken to examine expression and function of MIRNAS induced by cigarette smoke condensate (CSC) in normal human respiratory epithelia and lung cancer cells. Methodology: Micro-array and quantitative RT-PCR (QRT-PCR) techniques were used to assess MIRNA and host gene expression in cultured cells, and surgical specimens. Software-guided analysis, RNA cross-link immunoprecipitation (CLIP), 39 UTR luciferase reporter assays, QRT-PCR, focused super-arrays and western blot techniques were used to identify and confirm targets of miR-31. Chromatin immunoprecipitation (ChIP) techniques were used to evaluate histone marks and transcription factors within the LOC554202 promoter. Cell count and xenograft experiments were used to assess effects of miR-31 on proliferation and tumorigenicity of lung cancer cells. Results: CSC significantly increased miR-31 expression and activated LOC554202 in normal respiratory epithelia and lung cancer cells; miR-31 and LOC554202 expression persisted following discontinuation of CSC exposure. miR-31 and LOC554202 expression levels were significantly elevated in lung cancer specimens relative to adjacent normal lung tissues. CLIP and reporter assays demonstrated direct interaction of miR-31 with Dickkopf-1 (Dkk-1) and DACT-3. Over-expression of miR-31 markedly diminished Dkk-1 and DACT3 expression levels in normal respiratory epithelia and lung cancer cells. Knock-down of miR-31 increased Dkk-1 and DACT3 levels, and abrogated CSC-mediated decreases in Dkk-1 and DACT-3 expression. Furthermore, over-expression of miR-31 diminished SFRP1, SFRP4, and WIF-1, and increased Wnt-5a expression. CSC increased H3K4Me3, H3K9/14Ac and C/EBP-b levels within the LOC554202 promoter. Knock-down of C/EBP-b abrogated CSC-mediated activation of LOC554202. Over-expression of miR-31 significantly enhanced proliferation and tumorigenicity of lung cancer cells; knock-down of miR-31 inhibited growth of these cells. Conclusions:Cigarette smoke induces expression of miR-31 targeting several antagonists of cancer stem cell signaling in normal respiratory epithelia and lung cancer cells. miR-31 functions as an oncomir during human pulmonary carcinogenesis.

Figures

  • Figure 1. Expression of miR-31 in cultured cells exposed to CSC, primary lung cancers and adjacent normal lung tissues. A) qRT-PCR analysis of endogenous miR-31 expression normalized with control miRNA (RNU44) in SAEC, HBEC, Calu-6, and H841cells. Basal levels of miR-31 are higher in lung cancers relative to cultured normal or immortalized human respiratory epithelial cells. B) qRT-PCR analysis of miR-31 expression in SAEC, HBEC, Calu-6, and H841cells cultured in normal media (NM) with or without CSC for 5 days. Increased miR-31
  • Table 1. Clinicopathologic characteristics of 10 lung cancer patients used for miR31 analysis*.
  • Figure 2. miR-31 negatively regulates WNT signaling pathway antagonists in normal respiratory epithelia and lung cancer cells. A) miR-31 was over-expressed in SAEC, HBEC, Calu-6, and H841 cells via transient transfection of primary miR-31 constructs. qRT-PCR analysis confirmed high level miR-31 expression in miR-31-transfected relative to control cells. B) qRT-PCR analysis of Dkk-1 and DACT3 expression levels in SAEC, HBEC, Calu-6, and H841 cells with or without over-expression of miR-31. Over-expression of miR-31 decreased Dkk-1 and DACT3 in all four cell lines. C) qRTPCR analysis demonstrating decreased levels of endogenous miR-31 in SAEC, HBEC, Calu-6, and H841 cells following transient transfection of antisense-miR-31(Zip-miR-31) constructs relative to controls. D) qRT-PCR analysis of Dkk-1 and DACT3 expression levels in SAEC, HBEC, Calu-6 and H841 cells with or without down-regulation of miR-31. Knock-down of miR-31 enhances basal levels of Dkk-1 and DACT3 in these cells. E) qRT-PCR analysis demonstrating that knockdown of miR-31 partially blocks CSC-mediated decreases of Dkk-1 and DACT3 in SAEC. F) Western blot analysis of Dkk-1 and DACT3 expression in parental and vector control SAEC and Calu-6 cells, as well as SAEC and Calu-6 cells exhibiting constitutive overexpression or knock-down of miR-31. Densitometry values are normalized to b-actin control. Dkk-1 and DACT3 level were decreased, or somewhat enhanced in these cells following over-expression, or knock-down of miR-31, respectively. doi:10.1371/journal.pone.0013764.g002
  • Figure 3. WNT signaling pathway antagonists are direct target candidates of miR-31. A) Putative target sites of miR-31 within Dkk-1 39 UTR (top) and DACT3 39 UTR (bottom). B) miRNA-targeted transcripts in RISC were precipitated with AGO family antibodies after UV induced crosslinking of RNAs to their binding proteins, followed by RT-PCR amplification. Over-expression of miR-31 significantly increased precipitation of Dkk-1 and DACT3 target transcripts in SAEC cells. b-actin served as the negative control since no sequences in the 39 UTR that can be targeted by miR-31. C) Luciferase assays demonstrating reduction in luciferase activity in SAEC transfected with pMiR-Report vectors with or without insertion 39 UTR or mutated 39 UTR of WNT signaling antagonists. doi:10.1371/journal.pone.0013764.g003
  • Figure 4. Epigenetic alterations coinciding with CSC-mediated activation of miR-31. A) RT-PCR analysis demonstrating up-regulation of LOC554202 expression in SAEC following 5-day CSC exposure. Consistent with data pertaining to up-regulation of miR-31 by CSC, expression of LOC554202 persisted for 20 days following cessation of CSC exposure. B) qRT-PCR analysis demonstrating expression levels of LOC554202 in primary lung cancers relative to adjacent normal lung tissues. C) Schematic representation of LOC554202, the putative host gene of miR-31. A, B, C, and D represent positions of paired primers used for ChIP analysis. D) ChIP analysis depicting H3K4Me3 and H3K9/14 acetylation levels within four regions of the LOC554202 promoter (,1 kb, 2 kb, 3 kb, and, 5 kb from the TSS) in SAEC cultured with or without CSC. Increased activation marks were observed in the proximal promoter region following CSC exposure. doi:10.1371/journal.pone.0013764.g004
  • Figure 5. C/EBP-b mediates CSC-induced miR-31 transcription. A) Schematic representation of putative binding sites of C/EBP-b (vertical bars) in the LOC554202 promoter. The arrows show the positions of ChIP primers for C/EBP-b. B) qRT-PCR analysis demonstrating that CSC enhances C/ EBP-b but not C/EBP-a expression in SAEC and Calu-6 cells. C) qRT-PCR analysis demonstrating specificity of siRNAs targeting C/EBP-b and C/EBP-a in SAEC and Calu-6 cells. D) Left panel: qRT-PCR analysis of Bcl-xL expression in SAEC and Calu-6 cells cultured in the presence or absence of CSC following knock-down of C/EBP-b or C/EBP-a. CSC exposure dramatically increases Bcl-xL expression in SAEC and Calu-6 cells. Knock-down of C/EBP-b expression decreases activation of Bcl-xL by CSC. This phenomenon was not nearly as dramatic following knock-down of C/EBP-a. Right panel: qRTPCR analysis of LOC554202 expression in SAEC and Calu-6 cells cultured in the presence or absence of CSC following knock-down of C/EBP-b or
  • Figure 6. miR-31 functions as an oncomir in lung cancer cells. A/B) Direct cell count assays depicting in-vitro proliferation of Calu-6 and H841 lung cancer cells exhibiting over-expression or knock-down of miR-31. Constitutive over-expression of miR-31 increased proliferation, whereas knockdown of miR-31 diminished proliferation of Calu-6 (a) as well as H841 (b) cells relative to vector controls. C) Growth of H358 and Calu-6 tumor xenografts in nude mice. Calu-6 and H358 cells constitutively over-expressing miR-31 and vector controls (16106) were inoculated subcutaneously in the right and left flanks of athymic nude mice. Tumor volumes were determined every five days. The mean tumor volumes are shown. Volumes of xenografts derived from Calu-6 or H358 cells over-expressing miR-31 were significantly larger than vector controls (P,0.01). D) Tumor masses from H358 and Calu-6 xenografts. MiR-31 expression significantly increased average mass of H358 as well as Calu-6 xenografts (p,0.001). doi:10.1371/journal.pone.0013764.g006

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Xi, S., Yang, M., Tao, Y., Xu, H., Shan, J., Inchauste, S., … Schrump, D. S. (2010). Cigarette smoke induces C/EBP-β-mediated activation of mir-31 in normal human respiratory epithelia and lung cancer cells. PLoS ONE, 5(10). https://doi.org/10.1371/journal.pone.0013764

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