Removing redundancy in SWISS-PROT and TrEMBL

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Abstract

One of the distinguishing criteria of the SWISS-PROT protein sequence data bank is minimal redundancy. The introduction of TrEMBL as a supplementary database ensured the comprehensiveness of SWISS-PROT and TrEMBL but introduced some degree of redundancy. We developed a strategy to identify the redundancy present within and between SWISS-PROT and TrEMBL and its subsequent removal. Availability: The tools mentioned in this paper are available on request.

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O’Donovan, C., Martin, M. J., Glemet, E., Codani, J. J., & Apweiler, R. (1999). Removing redundancy in SWISS-PROT and TrEMBL. In Bioinformatics (Vol. 15, pp. 258–259). Oxford University Press. https://doi.org/10.1093/bioinformatics/15.3.258

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