Evolutionary phylodynamics of korean noroviruses reveals a novel gii.2/gii.10 recombination event

Abstract

Viral gastroenteritis is the most common causal agent of public health problems worldwide. Noroviruses cause nonbacterial acute gastroenteritis in humans of all ages. In this study, we investigated the occurrence of norovirus infection in children with acute gastroenteritis admitted to university hospitals in South Korea. We also analyzed the genetic diversity of the viruses and identified novel recombination events among the identified viral strains. Of 502 children with acute gastroenteritis admitted to our three hospitals between January 2011 and March 2012, genotyping of human noroviruses was performed in 171 (34%) norovirus-positive samples. Of these samples, 170 (99.5%) were in genogroup II (GII), while only one (0.5%) was in genogroup I (GI). The most common GII strain was the GII.4-2006b variant (n=96, 56.5%), followed by GII.6 (n=23, 13.5%), GII.12 (n=22, 12.9%), GII.3 (n=20, 11.8%), GII.2 (n=6, 3.5%), GII.b (n=2, 1.2%), and GII.10 (n=1, 0.6%). Potential recombination events (polymerase/capsid) were detected in 39 GII strains (22.9%), and the most frequent genotypes were GII.4/GII.12 (n=12, 30.8%), GII.4/ GII.6 (n=12, 30.8%), GII.4/GII.3 (n=8, 20.5%), GII.b/GII.3 (n=3, 7.7%), GII.16/GII.2 (n=2, 5.1%), GII.4/GII.2 (n=1, 2.6%), and GII.2/GII.10 (n= 1, 2.6%). For the first time, a novel GII.2/GII.10 recombination was detected; we also identified the GII.16/ GII.2 strain for the first time in South Korea. Our data provided important insights into new recombination events, which may prove valuable for predicting the emergence of circulating norovirus strains with global epidemic potential.