This chapter presents a method to process C. difficile whole-genome next-generation sequencing data straight from the sequencer. Quality control processing and de novo assembly of these data enable downstream analyses such as gene annotation and in silico multi-locus strain-type identification.
CITATION STYLE
Preston, M. D., & Stabler, R. A. (2016). From FASTQ to function: In silico methods for processing next-generation sequencing data. In Methods in Molecular Biology (Vol. 1476, pp. 23–33). Humana Press Inc. https://doi.org/10.1007/978-1-4939-6361-4_3
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