Phylobetadiversity among forest types in the Brazilian Atlantic Forest complex

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Abstract

Phylobetadiversity is defined as the phylogenetic resemblance between communities or biomes. Analyzing phylobeta-diversity patterns among different vegetation physiognomies within a single biome is crucial to understand the historical affinities between them. Based on the widely accepted idea that different forest physiognomies within the Southern Brazilian Atlantic Forest constitute different facies of a single biome, we hypothesize that more recent phylogenetic nodes should drive phylobetadiversity gradients between the different forest types within the Atlantic Forest, as the phylogenetic divergence among those forest types is biogeographically recent. We compiled information from 206 checklists describing the occurrence of shrub/tree species across three different forest physiognomies within the Southern Brazilian Atlantic Forest (Dense, Mixed and Seasonal forests). We analyzed intra-site phylogenetic structure (phylogenetic diversity, net relatedness index and nearest taxon index) and phylobetadiversity between plots located at different forest types, using five different methods differing in sensitivity to either basal or terminal nodes (phylogenetic fuzzy weighting, COMDIST, COMDISTNT, UniFrac and Rao's H). Mixed forests showed higher phylogenetic diversity and overdispersion than the other forest types. Furthermore, all forest types differed from each other in relation phylobetadiversity patterns, particularly when phylobetadiversity methods more sensitive to terminal nodes were employed. Mixed forests tended to show higher phylogenetic differentiation to Dense and Seasonal forests than these latter from each other. The higher phylogenetic diversity and phylobetadiversity levels found in Mixed forests when compared to the others likely result from the biogeographical origin of several taxa occurring in these forests. On one hand, Mixed forests shelter several temperate taxa, like the conifers Araucaria and Podocarpus. On the other hand, tropical groups, like Myrtaceae, are also very representative of this forest type. We point out to the need of more attention to Mixed forests as a conservation target within the Brazilian Atlantic Forest given their high phylogenetic uniqueness. © 2014 Duarte et al.

Figures

  • Table 1. Phylobetadiversity methods used to compare different forest types within the Southern Brazilian Atlantic Forest.
  • Figure 1. ANOVA with permutation tests for a) logarithmized species number, b) standardized phylogenetic diversity (SES.PD), c) net relatedness index (NRI) and d) nearest taxon index (NTI) for floristic plots occurring in different forest types within the Southern Brazilian Atlantic Forest. Probability plots drawn for each forest type define the relative frequency of values for each response variable. P-values obtained using 999 permutations. Different letters within the probability plots indicate significant difference between forest types (P#0.05). doi:10.1371/journal.pone.0105043.g001
  • Table 2. PERMANOVA with permutation tests comparing species composition and five different phylobetadiversity methods between different forest types within the Southern Brazilian Atlantic Forest.
  • Figure 2. Scatter plots of the PCPS 1 and 3 generated from the ordination of matrix P describing phylogenetic weighted species composition of floristic plots located in different forest types (Mixed, Dense and Seasonal) within the Southern Brazilian Atlantic Forest.

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Duarte, L. D. S., Bergamin, R. S., Marcilio-Silva, V., Seger, G. D. D. S., & Marques, M. C. M. (2014). Phylobetadiversity among forest types in the Brazilian Atlantic Forest complex. PLoS ONE, 9(8). https://doi.org/10.1371/journal.pone.0105043

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