A proposal for a coherent mammalian histone H1 nomenclature correlated with amino acid sequences

Abstract

Bio‐Rex 70 chromatography was combined with reverse‐phase (RP) HPLC to fractionate histone H1° and 4 histone H1 subtypes from human placental nuclei as previously described (Parseghian MH et al., 1993, Chromosome Res 1:127‐139). After proteolytic digestion of the subtypes with Staphylococcus aureus V8 protease, peptides were fractionated by RP‐HPLC and partially sequenced by Edman degradation in order to correlate them with human spleen subtypes (Ohe Y, Hayashi H, Iwai K, 1986, J Biochem (Tokyo) 100:359‐368; 1989, J Biochem (Tokyo) 106:844‐857). Based on comparisons with the sequence data available from other mammalian species, subtypes were grouped. These groupings were used to construct a coherent nomenclature for mammalian somatic Hls. Homologous subtypes possess characteristic patterns of growth‐related and cAMP‐dependent phosphorylation sites. The groupings defined by amino acid sequence also were used to correlate the elution profiles and electrophoretic mobilities of subtypes derived from different species. Previous attempts at establishing an H1 nomenclature by chromatographic or electrophoretic fractionations has resulted in several misidentifications. We present here, for the first time, a nomenclature for somatic Hls based on amino acid sequences that are analogous to those for H1° and Hlt. The groupings defined should be useful in correlating the many observations regarding H1 subtypes in the literature. Copyright © 1994 The Protein Society