Representing the UMLS® semantic network using OWL (or "what's in a Semantic Web link?")

Abstract

The Semantic Network, a component of the Unified Medical Language System® (UMLS), describes core biomedical knowledge consisting of semantic types and relationships. It is a well established, semi-formal ontology in widespread use for over a decade. We expected to "publish" this ontology on the Semantic Web, using OWL, with relatively little effort. However, we ran into a number of problems concerning alternative interpretations of the SN notation and the inability to express some of the interpretations in OWL. We detail these problems, as a cautionary tale to others planning to publish pre-existing ontologies on the Semantic Web, as a list of issues to consider when describing formally concepts in any ontology, and as a collection of criteria for evaluating alternative representations, which could form part of a methodology of ontology development. © Springer-Verlag Berlin Heidelberg 2003.