Diversity and evolution of myxobacterial type IV pilus systems

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Abstract

Type IV pili (T4P) are surface-exposed protein fibers that play key roles in the bacterial life cycle via surface attachment/adhesion, biofilm formation, motility, and development. The order Myxococcales (myxobacteria) are members of the class Deltaproteobacteria and known for their large genome size and complex social behaviors, including gliding motility, fruiting body formation, biofilm production, and prey hunting. Myxococcus xanthus, the best-characterized member of the order, relies on the appropriate expression of 17 type IVa (T4aP) genes organized in a single cluster plus additional genes (distributed throughout the genome) for social motility and development. Here, we compared T4aP genes organization within the myxobacteria to understand their evolutionary origins and diversity. We found that T4aP genes are organized as large clusters in suborder Cystobacterineae, whereas in other two suborders Sorangiineae and Nannocystineae, these genes are dispersed throughout the genome. Based on the genomic organization, the phylogeny of conserved proteins, and synteny studies among 28 myxobacterial and 66 Proteobacterial genomes, we propose an evolutionary model for the origin of myxobacterial T4aP genes independently from other orders in class Deltaproteobacteria. Considering a major role for T4P, this study further proposes the origins and evolution of social motility in myxobacteria and provides a foundation for understanding how complex-behavioral traits, such as gliding motility, multicellular development, etc., might have evolved in this diverse group of complex organisms.

Figures

  • FIGURE 1 | Distribution of T4aP genes among myxobacteria and outgroup organisms. The distribution of myxobacterial T4aP genes is mapped to a 16S rRNA-based phylogenetic tree using iTOL [https://itol.embl.de/]. Between the phylogenetic tree and gene distribution, taxonomy is mapped according to the color codes shown in the left corner. All genes are represented here with equal lengths and color codes: core T4P genes = orange; non-core T4P genes = blue; regulatory genes within T4P clusters (pilR and pilS) = green. Bootstrap values corresponding to the tree nodes are provided.
  • FIGURE 2 | PilT protein-based maximum likelihood phylogeny. Myxobacterial pilT encoded proteins were subjected to BLASTp against the studied organisms. The top hits were extracted and aligned with myxobacterial homologs, which we further used for the construction of the phylogenetic tree. Myxobacterial and outgroup pilT homologs, which are a part of a T4aP cluster, are shaded throughout the full clade from the center. Bootstrap values (>50%) are depicted here adjacent to the tree nodes. In the outer circle, we mapped taxonomy according to color codes shown in the left corner. Deltaproteobacteria-I includes members of orders Bdellovibrionales and Desulfuromonadales whereas Deltaproteobacteria-II includes members of Bradymonadales, Desulfarculales, Desulfobacterales, Desulfurellales, Desulfovibrionales, and Syntrophobacterales.
  • FIGURE 3 | T4aP cluster architecture. The modular organization of the T4aP loci is depicted according to the direction of transcription as in MxDK1622, going from left to right, using the color codes; core pili proteins as orange, rest of the pili genes as blue, and regulatory pili genes (pilR and pilS) as green. Digits in white boxes represent the number of intervening genes. The black arrow represents riboflavin kinase. Connecting black lines between boxes depict contiguous genes. Taxonomy and organism names are on the left.
  • FIGURE 4 | The final evolutionary model of myxobacterial T4aP cluster origin.

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APA

Sharma, G., Burrows, L. L., & Singer, M. (2018). Diversity and evolution of myxobacterial type IV pilus systems. Frontiers in Microbiology, 9(JUL). https://doi.org/10.3389/fmicb.2018.01630

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