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SimMLST: Simulation of multi-locus sequence typing data under a neutral model

Bioinformatics (2009) 25(11) 1442-1444
DOI: 10.1093/bioinformatics/btp145
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Abstract

Summary: Multi-locus sequence typing (MLST) is a widely used method of characterization of bacterial isolates. It has been applied to over 50 000 isolates in over 50 different species. Here, we present a coalescent method to jointly simulate MLST data and the clonal genealogy that gave rise to the sample. © The Author 2009. Published by Oxford University Press. All rights reserved.

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Didelot, X., Lawson, D., & Falush, D. (2009). SimMLST: Simulation of multi-locus sequence typing data under a neutral model. Bioinformatics, 25(11), 1442–1444. https://doi.org/10.1093/bioinformatics/btp145

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