Genetic variants in antigen presentation-related genes influence susceptibility to hepatitis C virus and viral clearance: A case control study

Abstract

Background: Genes related to antigen presentation pathway, which are in the non-classical class-II region of human leukocyte antigen (HLA), play a vital role during the infection of hepatitis C virus (HCV). Methods: The current study determined the genotypes of 34 tagging-SNPs (single nucleotide polymorphisms) from 9 candidate genes ( and ) in a Chinese population of paid blood donors with high risk of HCV infection. The distributions of those SNPs were compared among the 1207 former paid blood donors with different HCV infection outcomes. Results: rs1063478 and rs2284191 were independent factors of acquiring HCV infection. Carrying three favorable alleles of rs1063478-T and rs2284191-G offered the highest protective effect (odds ratio=0.46, 95% confidence intervals=0.27-0.78). rs7383287 and rs17587 were independent factors of infection chronicity. Subjects carrying two favorable alleles of rs7383287-G and rs17587-A had a decreased risk of HCV chronicity (odds ratio=0.42, 95% confidence intervals=0.26-0.66). The interaction analysis showed that experience of plasma donation interacted with the combined effects of rs1063478 and rs2284191 for HCV susceptibility, and the experience of whole blood donation interacted with the association of rs7383287 with HCV clearance. Conclusions: Our results suggested that genetic variants in antigen presentation pathway had influence on susceptibility to HCV infection and viral clearance. rs1063478, rs2284191, and rs7383287 were identified as novel loci in Chinese population that were involved in HCV infection.