Autosomal Recessive Nonsyndromic Hearing Impairment due to a Novel Deletion in the RDX Gene

  • Lee K
  • Amin ud Din M
  • Ansar M
  • et al.
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Abstract

The RDX gene anchors cytoskeletal actin of stereocilia to hair cell transmembrane and is responsible for autosomal recessive nonsyndromic hearing impairment (ARNSHI) due to DFNB24. A genome scan was performed using DNA samples from a consanguineous Pakistani family with ARNSHI. A significant maximum two-point LOD score of 4.5 ( θ = 0 ) and multipoint LOD score of 5.8 were achieved at marker D11S1998 (chr11 : 117.20 Mb). The region of homozygosity is bounded by markers D11S2000 (105.06 Mb) and D11S4464 (123.13 Mb) and contains the NSHI genes TECTA and RDX . Although no potentially causal variants were identified in the TECTA gene, within the RDX gene a novel deletion c.1076_1079delTTAA (p.Ile359Lysfs*6) was identified. The RDX deletion segregates with ARNSHI within the family and was not observed in 500 control chromosomes. It is predicted to cause premature truncation of radixin at the α -helical domain and to result in nonfunctional transcripts within the cochlea. RDX isoforms which encode the coiled-coil region of the α -helical domain are deemed necessary for proper function of hair cell stereocilia.

Figures

  • Figure 1: Pedigree drawing and haplotype of family 4208 with the genetic interval on chromosome 11. Filled symbols denote individuals with ARNSHI, while clear symbols represent hearing individuals. The haplotype segregating with ARNSHI is shown in a box and includes short tandem repeat markers and the RDX deletion c.1076 1079delTTAA (p.Ile359Lysfs∗6) as a triangle. The positions of the TECTA and RDX genes relative to the genome scan markers are labelled. The genetic interval with genotyped marker loci and locations of RDX and TECTA genes were indicated on the cartoon of chromosome 11.
  • Table 1: Two-point and multipoint LOD scores for family 4208 at chromosome 11q22.3-q24.1.
  • Figure 2: Chromatogram displaying the novel RDX deletion c.1076 1079delTTAA (p.Ile359Lysfs∗6). Chromatograms shown are from sequences of the following: (a) wild type, (b) hearingimpaired homozygous individual VII-1, and (c) unaffected heterozygous individual VI-5. The deleted nucleotides TTAA are indicated with a red triangle.
  • Figure 3: (a) Schematic representation of protein domains and isoforms of RDX gene. The positions of known pathogenic mutations were indicated with arrow and the newly identified mutation was boxed. The protein domain structure is based on the reference sequence NP 002897 (transcript isoform a). (b) Clustal W multiple sequence alignment of alpha-helical domain of RDX protein sequences of seven different species. The 1st and 4th amino acid residues of heptad repeat sequences are highly conserved through the species.

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APA

Lee, K., Amin ud Din, M., Ansar, M., Santos-Cortez, R. L. P., Ahmad, W., & Leal, S. M. (2011). Autosomal Recessive Nonsyndromic Hearing Impairment due to a Novel Deletion in the RDX Gene. Genetics Research International, 2011, 1–5. https://doi.org/10.4061/2011/294675

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