Object-oriented NeuroSys: Parallel programs for simulating large networks of biologically accurate neurons

Abstract

Object-oriented NeuroSys is a collection of programs for simulating very large networks of biologically accurate neurons on distributed memory parallel computers. It includes two principle programs: ooNeuroSys, a parallel program for solving the systems of ordinary differential equations arising from the modelling of large networks of interconnected neurons, and Neurondiz, a parallel program for visualizing the results of ooNeuroSys. Both programs are designed to be run on clusters and use the MPI library to obtain parallelism. ooNeuroSys also includes an easy-to-use Python interface. This interface allows neuroscientists to quickly develop and test complex neuron models. Both ooNeuroSys and Neurondiz have a design that allows for both high performance and relative ease of maintenance. © Springer-Verlag Berlin Heidelberg 2003.