Determinants of Selectivity for the Formation of Monocyclic and Bicyclic Products in Monoterpene Synthases

Abstract

Monoterpene synthases (MTSs) catalyze the initial committed step in the biosynthesis of monoterpenes. MTSs control challenging reactions that involve highly reactive carbocations through exquisite steric and electrostatic confinement, in some cases with remarkable product specificity and enantioselectivity. Using two well-characterized MTSs as models, (4S)-(-)-limonene synthase (LMNS) and (+)-bornyl diphosphate synthase (BPPS), we implemented an iterative approach that involves comparative atomistic simulations and experimental testing of wild-type enzymes and thirty-six variants to identify the mechanistic underpinnings of selectivity. Free energy simulations indicate that a common reaction intermediate, the α-terpinyl cation (ATC), preferentially adopts one of two different conformations in LMNS and BPPS, thus leading to the formation of monocyclic monoterpenes in the former and bicyclic products in the latter. An assessment of the ATC binding free energy in LMNS, BPPS, and variants revealed that nonbonded interactions with active site residues explain the propensity of the ATC to assume a favored conformation that is consistent with the experimentally determined reaction outcome. The free energy of the ATC in different environments (active sites of LMNS, BPPS, and variants) correlates strongly with the ratio of monocyclic to bicyclic products in model MTSs.