Horizontal gene transfer in soil and the rhizosphere: Impact on ecological fitness of bacteria

Abstract

The ecological fitness of soil- and root-associated bacterial communities is a key element for soil fertility and plant health as well as plant stress tolerance. Genetic variability in bacterial populations is maintained through mutation and gene acquisition. Horizontal gene transfer (HGT) is accomplished by conjugation, transformation, and transduction both in vitro and under natural conditions. Mobile genetic elements (MGEs) play a significant role in gene dissemination in bacterial communities and increase their adaptability, survival, and ability to colonize different environmental niches. In this context, bacterial conjugative plasmids encoding resistance genes, degradative genes, and tolerance to stress conditions are of much significance. The biofilm mode of bacterial growth further enhances gene exchange and increase the fitness and competitiveness of bacteria. Microcosm studies reveal a number of factors influencing the HGT process in soil. Considering the importance of HGT, a better understanding of genetic processes in the rhizosphere will further help in effective exploitation of naturally engineered bacteria for sustainable agriculture.