In this work, an annotation workflow was developed, which performs a series of annotation tasks to sequences originating from metagenomic samples, using standard bioinformatics tools and Perl scripts. The Perl scripts interact with a Mysql database in order to store all annotation results to the respective tables, thus rendering easy the quick access and querying to all data. The whole pipeline was integrated into a Galaxy server, which provides a simple and intuitive interface that allows the user to easily create, run and share workflows for large datasets. © 2012 Springer-Verlag.
CITATION STYLE
Pilalis, E., Ladoukakis, E., Kolisis, F. N., & Chatziioannou, A. (2012). A Galaxy workflow for the functional annotation of metagenomic samples. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 7297 LNCS, pp. 247–253). https://doi.org/10.1007/978-3-642-30448-4_31
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