Pug-View: Programmatic access to chemical annotations integrated in PubChem

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Abstract

PubChem is a chemical data repository that provides comprehensive information on various chemical entities. It contains a wealth of chemical information from hundreds of data sources. Programmatic access to this large amount of data provides researchers with new opportunities for data-intensive research. PubChem provides several programmatic access routes. One of these is PUG-View, which is a Representational State Transfer (REST)-style web service interface specialized for accessing annotation data contained in PubChem. The present paper describes various aspects of PUG-View, including the scope of data accessible through PUG-View, the syntax for formulating a PUG-View request URL, the difference of PUG-View from other web service interfaces in PubChem, and its limitations and usage policies.

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Kim, S., Thiessen, P. A., Cheng, T., Zhang, J., Gindulyte, A., & Bolton, E. E. (2019). Pug-View: Programmatic access to chemical annotations integrated in PubChem. Journal of Cheminformatics, 11(1). https://doi.org/10.1186/s13321-019-0375-2

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