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A constrained, force-directed layout algorithm for biological pathways

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (2004) 2912 314-319
DOI: 10.1007/978-3-540-24595-7_29
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Abstract

We present a new elegant algorithm for layout of biological signaling pathways. It uses a force-directed layout scheme, taking into account directional and regional constraints enforced by different molecular interaction types and subcellular locations in a cell. The algorithm has been successfully implemented as part of a pathway integration and analysis toolkit named Patika, and results with respect to computational complexity and quality of the layout have been found satisfactory.

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APA

Genc, B., & Dogrusoz, U. (2004). A constrained, force-directed layout algorithm for biological pathways. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 2912, pp. 314–319). Springer Verlag. https://doi.org/10.1007/978-3-540-24595-7_29

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