Persistent homology on grassmann manifolds for analysis of hyperspectral movies

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Abstract

The existence of characteristic structure, or shape, in complex data sets has been recognized as increasingly important for mathematical data analysis. This realization has motivated the development of new tools such as persistent homology for exploring topological invariants, or features, in large data sets. In this paper, we apply persistent homology to the characterization of gas plumes in time dependent sequences of hyperspectral cubes, i.e. the analysis of 4-way arrays. We investigate hyperspectral movies of Long-Wavelength Infrared data monitoring an experimental release of chemical simulant into the air. Our approach models regions of interest within the hyperspectral data cubes as points on the real Grassmann manifold G(k, n) (whose points parameterize the k-dimensional subspaces of ℝn), contrasting our approach with the more standard framework in Euclidean space. An advantage of this approach is that it allows a sequence of time slices in a hyperspectral movie to be collapsed to a sequence of points in such a way that some of the key structure within and between the slices is encoded by the points on the Grassmann manifold. This motivates the search for topological features, associated with the evolution of the frames of a hyperspectral movie, within the corresponding points on the Grassmann manifold. The proposed mathematical model affords the processing of large data sets while retaining valuable discriminatory information. In this paper, we discuss how embedding our data in the Grassmann manifold, together with topological data analysis, captures dynamical events that occur as the chemical plume is released and evolves.

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Chepushtanova, S., Kirby, M., Peterson, C., & Ziegelmeier, L. (2016). Persistent homology on grassmann manifolds for analysis of hyperspectral movies. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 9667, pp. 228–239). Springer Verlag. https://doi.org/10.1007/978-3-319-39441-1_21

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