Oligomerization, conformational stability and thermal unfolding of harpin, Hrpzpssand its hypersensitive response-inducing c-terminal fragment, c-214-Hrpzpss

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Abstract

HrpZ-a harpin from Pseudomonas syringae-is a highly thermostable protein that exhibits multifunctional abilities e.g., it elicits hypersensitive response (HR), enhances plant growth, acts as a virulence factor, and forms pores in plant plasma membranes as well as artificial membranes. However, the molecular mechanism of its biological activity and high thermal stability remained poorly understood. HR inducing abilities of non-overlapping short deletion mutants of harpins put further constraints on the ability to establish structure-activity relationships. We characterized HrpZPss from Pseudomonas syringae pv. syringae and its HR inducing C-terminal fragment with 214 amino acids (C-214-HrpZPss) using calorimetric, spectroscopic and microscopic approaches. Both C-214-HrpZPss and HrpZPss were found to form oligomers. We propose that leucine-zipper-like motifs may take part in the formation of oligomeric aggregates, and oligomerization could be related to HR elicitation. CD, DSC and fluorescence studies showed that the thermal unfolding of these proteins is complex and involves multiple steps. The comparable conformational stability at 25°C ( ∼10.0 kcal/mol) of HrpZPss and C-214-HrpZPss further suggest that their structures are flexible, and the flexibility allows them to adopt proper conformation for multifunctional abilities.

Figures

  • Fig. 1. Circular dichroism spectroscopy. A) Far-UV CD spectra of C-214-HrpZPss (solid line) and full length HrpZPss (dashed line) at 25˚C. The dotted line corresponds to the calculated fit obtained by using the CDSSTR program for C-214-HrpZPss. B) Temperature dependence of a-helical content in C-214HrpZPss.
  • Fig. 2. Differential scanning calorimetry. DSC thermograms of C-214-HrpZPss (A) and full length HrpZPss (B). The scan rate was 60 o.h21. The change in heat capacity (DCp) of the native protein and the denatured state are shown. Deconvolution of DSC thermogram of C-214-HrpZPss (C) and full length HrpZPss (D). The experimentally obtained thermograms are shown as solid lines, individual transitions deduced from deconvolution analysis are shown as dashed lines and the sum of the transitions obtained from deconvolution analysis are shown as dotted lines.
  • Table 1. Thermodynamic parameters for the thermal unfolding of C-214-HrpZPss.
  • Table 2. Results of CD spectral analysis of C-214-HrpZPss.
  • Fig. 3. Tryptophan exposure and thermal unfolding. (A) Stern-Volmer plots for the quenching of the intrinsic fluorescence of C-214-HrpZPss with acrylamide (%), iodide ion (#) and cesium ion (m). Temperature dependence of (B) tryptophan emission maximum, and (C) fluorescence intensity at emission maximum, of C214-HrpZPss.
  • Fig. 4. Differential oligomerization of C-214-HrpZPss and full length HrpZPss studied by AFM. C-214HrpZPss forms non specific aggregates (A), whereas full length HrpZPss is characterized by the formation of both non-specific and fibrillar aggregates (B). Scale bar: 0.5 mm.
  • Fig. 5. Ribbon representation of the 3D structure of C-214-HrpZPss. Residues involved in leucine-zipperlike motif or coiled-coil motif are highlighted in red (stretch-1), green (stretch-2) and blue (stretch-3). Amino acid sequences of the leucine-zipper-like motif or coiled-coil motif at various segments of the protein are shown with putative leucine-zipper or coiled-coil forming residues highlighted in bold. Since 127 amino acids were deleted in C-214-HrpZPss, residue 128 was numbered as 1.
  • Fig. 6. Conformational stability curves of C-214HrpZPss and HrpZPss. Solid lines correspond to dimer - unfolded state transition (DGDi-U). Values of DG2 and DG3 for HrpZPss corresponding to transition 2 and 3 were calculated using equations 1 and 2 (see text for more details).

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CITATION STYLE

APA

Tarafdar, P. K., Vedantam, L. V., Sankhala, R. S., Purushotham, P., Podile, A. R., & Swamy, M. J. (2014). Oligomerization, conformational stability and thermal unfolding of harpin, Hrpzpssand its hypersensitive response-inducing c-terminal fragment, c-214-Hrpzpss. PLoS ONE, 9(12). https://doi.org/10.1371/journal.pone.0109871

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