Genotyping is a method necessary to distinguish between strains of bacteria. Using whole sequences for analysis is a computational demanding and time-consuming approach. We establish a workflow to convert sequences to a numerical signal representing the variability of sequences. After segmentation and using only parts of the signals, they have still enough information to form a topologically according to the clustering structure.
CITATION STYLE
Barton, V., Nykrynova, M., Bezdicek, M., Lengerova, M., & Skutkova, H. (2019). Clustering of Klebsiella Strains Based on Variability in Sequencing Data. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 11466 LNBI, pp. 189–199). Springer Verlag. https://doi.org/10.1007/978-3-030-17935-9_18
Mendeley helps you to discover research relevant for your work.