Identifying nonpolar transbila yer helices in amino acid sequences of membrane proteins

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Abstract

The following sections are included: PERSPECTIVES AND OVERVIEW INTRODUCTION HELICES IN LIPID BILAYER ENVIRONMENTS Theoretical Considerations Experimentally Observed Membrane Protein Secondary Structures DETERMINATION OF HELIX LOCATIONS FROM SEQUENCE DATA Appropriate Scales of Hydrophobicity for Bilayers and Protein Interiors A Polarity Scale for Identifying Transmembrane Helices Comparison with Other Polarity Scales Overview of Polarity Scales USE OF SCALES TO IDENTIFY TRANSMEMBRANE HELICES Energetic Consequences of Helical Conformation Entropy of Immobilization Choice of Window Length and Scanning Procedures Comparison of Scales Significance of Peaks in the Sequence Analysis.

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Engelman, D. M., Steitz, T. A., & Goldman, A. (2020). Identifying nonpolar transbila yer helices in amino acid sequences of membrane proteins. In Structural Insights into Gene Expression and Protein Synthesis (pp. 147–179). World Scientific Publishing Co. https://doi.org/10.1146/annurev.biophys.15.1.321

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