Genome-wide association studies (GWAS) are a valuable approach to identify single nucleotide polymorphisms (SNPs) associated with a phenotype of interest. There are now a variety of R-packages and command line tools available to perform GWAS. Here, we provide an example downloading and filtering SNP data, followed by GWAS analysis using the R-package rMVP.
CITATION STYLE
Anderson, R., Fernandez, C. T., Yuan, Y., Golicz, A. A., Edwards, D., & Bayer, P. E. (2020). Method for genome-wide association study: A soybean example. In Methods in Molecular Biology (Vol. 2107, pp. 147–158). Humana Press Inc. https://doi.org/10.1007/978-1-0716-0235-5_7
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