Kinetic modeling of the mitochondrial energy metabolism of neuronal cells: The impact of reduced α-Ketoglutarate dehydrogenase activities on ATP production and generation of reactive oxygen species

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Abstract

Reduced activity of brain I-ketoglutarate dehydrogenase complex (KGDHC) occurs in a number of neurodegenerative diseases like Parkinson's disease and Alzheimer's disease. In order to quantify the relation between diminished KGDHC activity and the mitochondrial ATP generation, redox state, transmembrane potential, and generation of reactive oxygen species (ROS) by the respiratory chain (RC), we developed a detailed kinetic model. Model simulations revealed a threshold-like decline of the ATP production rate at about 60% inhibition of KGDHC accompanied by a significant increase of the mitochondrial membrane potential. By contrast, progressive inhibition of the enzyme aconitase had only little impact on these mitochondrial parameters. As KGDHC is susceptible to ROS-dependent inactivation, we also investigated the reduction state of those sites of the RC proposed to be involved in ROS production. The reduction state of all sites except one decreased with increasing degree of KGDHC inhibition suggesting an ROS-reducing effect of KGDHC inhibition. Our model underpins the important role of reduced KGDHC activity in the energetic breakdown of neuronal cells during development of neurodegenerative diseases. Copyright © 2012 Nikolaus Berndt et al.

Figures

  • Figure 1: Schematic of the mathematical model. Pyruvate (Pyr) is the only substrate of the TCA cycle. Pyruvate is decarboxylated by pyruvate dehydrogenase (PDH) to acetyl-CoA (ACoA), which is then condensed with oxaloacetate (OA) to citrate (Cit) via the citrate synthase (CS). Citrate is converted to isocitrate (IsoCit) by the aconitase (AC), which is further converted to α-ketoglutarate (aKG) via the isocitrate dehydrogenase (IDH) producing NADH from NAD in the process. The α-ketogluterate dehydrogenase complex (KGDHC) catalyses the reaction of α-ketogluterate with Coenzyme A to succinyl-CoA (SucCoA) under reduction of NAD to NADH. Succinyl-CoA is further metabolized by succinyl-CoA synthase (SCS) to succinate (Suc) by phosphorylating ADP to ATP (substrate-chain phosphorylation). Succinate is dehydrogenated to fumarate (Fum) by the succinate dehydrogenase (SDH, complex II) reducing ubiquinone to ubiquinol (see legend of Figure 2). Fumerase (FUM) converts fumerate tomalate (Mal), which is oxidized bymalate dehydrogenase (MDH) again producing one NADH and regenerating the initial oxalacetate so the cycle can start over again. In summary, PDH and the TCA cycle produce one ATP from ADP, one ubiquinol from ubiquinone, and four NADHs from NAD while oxidizing one pyruvate to three CO2. Oxidation of NADH and/or succinate in the respiratory chain, is coupled to transmembrane proton pumping which generates a proton gradient and a mitochondrial membrane potential. The proton gradient is used to fuel pyruvate uptake from the cytosol into the matrix via pyruvate transporter, pumping of sodium, potassium from the matrix into the intermembrane space/cytosol, phosphate transport from the cytosol into the matrix space, and ATP generation by the F0F1-ATPase. The mitochondrial membrane potential drives the ATP/ADP exchange between the matrix and the intermembrane space/cytosol. The model also comprises the passive exchange of protons, sodium, potassium and chloride between the matrix and the intermembrane space/cytosol driven by electrodiffusion as well as the mitochondrial membrane potential. Cytosolic ATP is hydrolyzed to ADP and phosphate to meet the energy demand of the cell.
  • Figure 2: Schematic of the respiratory chain. The respiratory chain: in complex I, NADH is oxidized to NAD, while four protons are pumped from the mitochondrial matrix into the intermembrane space/cytosol. Concomitantly ubiquinon (Q), residing in the inner membranous space, is reduced to ubiquinol (QH2) along with the uptake of two matrix protons. In Complex II, succinate is oxidized to fumarate while ubiquinon is reduced to ubiquinol. In this reduction two protons are taken up from the matrix space, but no protons are pumped across the mitochondrial membrane. In complex III, innermembranous ubiquinol is oxidized to ubiquinon. Via the q-cycle mechanism, two protons are taken up from the matrix space, and four protons are released into the inter membrane space/cytosol. The two electrons are consecutively transferred via Fe-S cluster to cytochrome c1 and reduce two molecules of cytochrome c. In complex IV, two molecules of reduced cytochrome c are oxidized, and oxygen is reduced to water along with the transduction of two protons from the matrix space into the inter membrane space/cytosol. With either NADH or succinate as substrates, the respiratory chain pumps ten and six protons, respectively, from the matrix space to the inter membrane space/cytosol, and one molecule of water is formed.
  • Figure 3: Comparison of simulated and experimentally determined concentrations of TCAC intermediates. Green bars indicate the concentration range of reported experimental values [21–29]. Blue bars (normal state) and red bars (50% inhibition of KGDHC) indicate variations of concentration when varying the energetic load between 33% and 100% of maximum.
  • Figure 4: System characteristics under energetic challenge. Energetic demand was varied and behaviour of system variables determined. (a) mitochondrial membrane potential; (b) blue NADH to NAD ratio, red oxygen consumption rate; (c) share of created proton gradient used for ATP synthesis; (d) blue: ubiquinon at p-site, green: ubiquinol at n-site, red: ubiquinon at n-site, black: ubiquinol at p-site. ATP production and oxygen consumption are normalized to the reference state of the system.
  • Figure 5: Potential ROS producing states in the RC. ROS producing states of complex I ((a) and (b)) and complex III ((c) and (d)) are depicted versus the mitochondrial membrane potential ((a) and (c)) or the ATP production rate. Red: fully reduced flavin, green: flavin radical, blue: semi-ubiquinon at n-site bound to the respective complex, black: semi-ubiquinon at p-site bound to complex III. ATP production and occupation of ROS producing states are normalized to the reference state of the system.
  • Figure 6: System characteristics under KGDHC inhibition. ATP production rate (red), NADH level (green), mitochondrial membrane potential (magenta, right scale), and reduced cytochrome c level (black) at normal ATP demand versus increased inhibition of KGDHC, maximal ATP production capacity in blue. Values except membrane potential normalized to reference state without inhibition.
  • Figure 7: Mitochondrial membrane potential characteristics at inhibition of KGDHC. Mitochondrial membrane potential versus the ATP production rate at different inhibition levels of KGDHC. Dotted line: −80mV membrane potential level.
  • Figure 8: NADH level characteristics at varying ATP demand and KGDHC inhibition. NADH level is depicted as colour value (right scale). NADH level and ATP production are normalized to the reference state without KGDHC inhibition.

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Berndt, N., Bulik, S., & Holzhütter, H. G. (2012). Kinetic modeling of the mitochondrial energy metabolism of neuronal cells: The impact of reduced α-Ketoglutarate dehydrogenase activities on ATP production and generation of reactive oxygen species. International Journal of Cell Biology. https://doi.org/10.1155/2012/757594

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