Text mining on pubmed

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Abstract

A technology of linguistic analysis with the use of computer methods is called a text mining.Computer tools based on this technology can provide a wide range of tasks, including: 1. The task of finding a relevant literature with the user-specified criteria and determination of the correspondence between single article or manually specified picks of articles and researching area of knowledge or a set of predesignated areas 2. The task of identification and extraction of names of biological objects that can be found in the raw text (e.g., genes, proteins, metabolites) with extra information on them, such as the type of object and names of its synonyms 3. The task of establishment of relationships between objects that had been automatically recognized in text with the representation of the obtained data in a form convenient for the further analysis, for example, in the form of associative networks

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Ivanisenko, T. V., Demenkov, P. S., & Ivanisenko, V. A. (2014). Text mining on pubmed. In Approaches in Integrative Bioinformatics: Towards the Virtual Cell (pp. 161–170). Springer Berlin Heidelberg. https://doi.org/10.1007/978-3-642-41281-3_6

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