The task of approximate string matching is to find all locations at which a pattern string p of length m matches a substring of a text string t of length n with at most k differences. It is common to use Levenshtein distance [5], which allows the differences to be single-character insertions, deletions, substitutions. Recently, in [3], the IndelMYE, IndelWM and IndelBYN algorithms where introduced as modified version of the bit-parallel algorithms of Myers [6], Wu&Manber [10] and Baeza-Yates&Navarro [1], respectively. These modified versions where made to support the indel distance (only single-character insertions and/or deletions are allowed). In this paper we present an improved version of IndelMYE that makes a better use of the bit-operations and runs 24.5 percent faster in practice. In the end we present a complete set of experimental results to support our findings. © Springer-Verlag Berlin Heidelberg 2005.
CITATION STYLE
Hyyrö, H., Pinzon, Y., & Shinohara, A. (2005). New bit-parallel indel-distance algorithm. In Lecture Notes in Computer Science (Vol. 3503, pp. 380–390). Springer Verlag. https://doi.org/10.1007/11427186_33
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