AnABlast: Re-searching for protein-coding sequences in genomic regions

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Abstract

AnABlast is a computational tool that highlights protein-coding regions within intergenic and intronic DNA sequences which escape detection by standard gene prediction algorithms. DNA sequences with small protein-coding genes or exons, complex intron-containing genes, or degenerated DNA fragments are efficiently targeted by AnABlast. Furthermore, this algorithm is particularly useful in detecting protein-coding sequences with nonsignificant homologs to sequences in databases. AnABlast can be executed online at http://www.bioinfocabd.upo.es/anablast/.

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Rubio, A., Casimiro-Soriguer, C. S., Mier, P., Andrade-Navarro, M. A., Garzón, A., Jimenez, J., & Pérez-Pulido, A. J. (2019). AnABlast: Re-searching for protein-coding sequences in genomic regions. In Methods in Molecular Biology (Vol. 1962, pp. 207–214). Humana Press Inc. https://doi.org/10.1007/978-1-4939-9173-0_12

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