BioWarehouse is an open-source project for integrating bioinformatics databases within a relational database warehouse. It has two key features. A comprehensive database schema models many different bioinformatics datatypes. A set of loader tools permits loading of public bioinformatics databases, and of standard bioinformatics formats, into that database schema. Thus, multiple databases can be queried together within a single common schema. The supported databases are BioCyc, CMR, ENZYME, Eco2DBase, Genbank, Gene Ontology, KEGG, NCBI Taxonomy, and UniProt. The supported formats are BioPAX (protein interactions subset only) and MAGE-ML. © 2008 Springer-Verlag Berlin Heidelberg.
CITATION STYLE
Karp, P. D., Lee, T. J., & Wagner, V. (2008). BioWarehouse: Relational integration of eleven bioinformatics databases and formats. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 5109 LNBI, pp. 5–7). https://doi.org/10.1007/978-3-540-69828-9_2
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