Popping superbubbles and discovering clumps: Recent developments in biological sequence analysis

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Abstract

The information that can be inferred or predicted from knowing the genomic sequence of an organism is astonishing. String algorithms are critical to this process. This paper provides an overview of two particular problems that arise during computational molecular biology research, and recent algorithmic developments in solving them.

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Iliopoulos, C. S., Kundu, R., Mohamed, M., & Vayani, F. (2016). Popping superbubbles and discovering clumps: Recent developments in biological sequence analysis. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 9627, pp. 3–14). Springer Verlag. https://doi.org/10.1007/978-3-319-30139-6_1

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