Abstract
Biological cell simulations generally require high-powered computer resources. A reconfigurable system is a possible solution to the problem as an alternative approach against PC/WS clusters. A stochastic simulation algorithm proposed by Gillespie is implemented on a reconfigurable platform called ReCSiP, and the performance is evaluated. The implemented Lotka system outperforms the software implementation on AthlonXP2800+ by 105.13 times. © Springer-Verlag Berlin Heidelberg 2004.
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CITATION STYLE
Yoshimi, M., Osana, Y., Fukushima, T., & Amano, H. (2004). Stochastic simulation for biochemical reactions on FPGA. Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 3203, 105–114. https://doi.org/10.1007/978-3-540-30117-2_13
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