eBCSgen: A Software Tool for Biochemical Space Language

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Abstract

eBCSgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL). BCSL is a rule-based language for biological systems designed to combine compact description with a specific level of abstraction which makes it accessible to users from life sciences. Currently, eBCSgen represents the only tool completely supporting BCSL. It has the form of a command line interface which is integrated into Galaxy – a web-based bioinformatics platform automating data-driven and model-based analysis pipelines.

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Troják, M., Šafránek, D., Mertová, L., & Brim, L. (2020). eBCSgen: A Software Tool for Biochemical Space Language. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 12314 LNBI, pp. 356–361). Springer Science and Business Media Deutschland GmbH. https://doi.org/10.1007/978-3-030-60327-4_20

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