CyNeo4j: Connecting Neo4j and Cytoscape

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Abstract

We developed cyNeo4j, a Cytoscape App to link Cytoscape and Neo4j databases to utilize the performance and storage capacities Neo4j offers. We implemented a Neo4j NetworkAnalyzer, ForceAtlas2 layout and Cypher component to demonstrate the possibilities a distributed setup of Cytoscape and Neo4j have.

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Summer, G., Kelder, T., Ono, K., Radonjic, M., Heymans, S., & Demchak, B. (2015). CyNeo4j: Connecting Neo4j and Cytoscape. Bioinformatics, 31(23), 3868–3869. https://doi.org/10.1093/bioinformatics/btv460

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