Algorithms for visualizing phylogenetic networks

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Abstract

We study the problem of visualizing phylogenetic networks, which are extensions of the Tree of Life in biology. We use a space filling visualization method, called DAGmaps, in order to obtain clear visualizations using limited space. In this paper, we restrict our attention to galled trees and galled networks and present linear time algorithms for visualizing them as DAGmaps.

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Tollis, I. G., & Kakoulis, K. G. (2016). Algorithms for visualizing phylogenetic networks. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 9801 LNCS, pp. 183–195). Springer Verlag. https://doi.org/10.1007/978-3-319-50106-2_15

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