This paper presents a model used to deal with three-dimensional off-lattice AB protein folding. The model is extended from genetic-annealing algorithm that is for the two-dimensional off-lattice AB protein model. The three-dimensional model also has only two types of residues, hydrophobic and hydrophilic. Based on a physical model, the problem is converted from a nonlinear constraint-satisfied problem to an unconstrained optimization problem. Also, in contrast to earlier studies using off-lattice AB models, our results demonstrate that the proposed methods are very promising for searching the ground states of protein folding in three dimensions. © Springer-Verlag Berlin Heidelberg 2007.
CITATION STYLE
Zhang, X., Lin, X., Wan, C., & Li, T. (2007). Genetic-annealing algorithm for 3D off-lattice protein folding model. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (Vol. 4819 LNAI, pp. 186–193). Springer Verlag. https://doi.org/10.1007/978-3-540-77018-3_20
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