Circles: Automating the comparative analysis of RNA secondary structure

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Abstract

Circles is a program for inferring RNA secondary structure using maximum weight matching. The program can read in an alignment in FASTA, ClustalW, or NEXUS format, compute a maximum weight matching, and export one or more secondary structures in various file formats.

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APA

Page, R. D. M. (2000). Circles: Automating the comparative analysis of RNA secondary structure. Bioinformatics, 16(11), 1042–1043. https://doi.org/10.1093/bioinformatics/16.11.1042

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