Many biological sequences have a segmental structure that can provide valuable clues to their content, structure, and function. The program changept is a tool for investigating the segmental structure of a sequence, and can also be applied to multiple sequences in parallel to identify a common segmental structure, thus providing a method for integrating multiple data types to identify functional elements in genomes. In the previous edition of this book, a command line interface for changept is described. Here we present a graphical user interface for this package, called changeptGUI. This interface also includes tools for pre-and post-processing of data and results to facilitate investigation of the number and characteristics of segment classes.
CITATION STYLE
Tasker, E., & Keith, J. M. (2017). Sequence segmentation with changeptGUI. In Methods in Molecular Biology (Vol. 1525, pp. 293–312). Humana Press Inc. https://doi.org/10.1007/978-1-4939-6622-6_12
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