Abstract
In this chapter, I review the basic algorithm underlying the CODEML model implemented in the software package PAML. This is intended as a companion to the software’s manual, and a primer to the extensive literature available on CODEML. At the end of this chapter, I hope that you will be able to understand enough of how CODEML operates to plan your own analyses.
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da Silva, A. G. (2017). Measuring natural selection. In Methods in Molecular Biology (Vol. 1525, pp. 315–347). Humana Press Inc. https://doi.org/10.1007/978-1-4939-6622-6_13
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