Metabolite profiling of low-P tolerant and low-P sensitive maize genotypes under phosphorus starvation and restoration conditions

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Abstract

Background: Maize (Zea mays L.) is one of the most widely cultivated crop plants. Unavoidable economic and environmental problems associated with the excessive use of phosphatic fertilizers demands its better management. The solution lies in improving the phosphorus (P) use efficiency to sustain productivity even at low P levels. Untargeted metabolomic profiling of contrasting genotypes provides a snap shot of whole metabolome which differs under specific conditions. This information provides an understanding of the mechanisms underlying tolerance to P stress and the approach for increasing P-use-efficiency. Methodology/Principal Findings: A comparative metabolite-profiling approach based on gas chromatography-mass spectrometry (GC/MS) was applied to investigate the effect of P starvation and its restoration in low-P sensitive (HM-4) and low-P tolerant (PEHM-2) maize genotypes. A comparison of the metabolite profiles of contrasting genotypes in response to P-deficiency revealed distinct differences among low-P sensitive and tolerant genotypes. Another set of these genotypes were grown under P-restoration condition and sampled at different time intervals (3, 5 and 10 days) to investigate if the changes in metabolite profile under P-deficiency was restored. Significant variations in the metabolite pools of these genotypes were observed under P-deficiency which were genotype specific. Out of 180 distinct analytes, 91 were identified. Phosphorus-starvation resulted in accumulation of di- and trisaccharides and metabolites of ammonium metabolism, specifically in leaves, but decreased the levels of phosphate-containing metabolites and organic acids. A sharp increase in the concentrations of glutamine, asparagine, serine and glycine was observed in both shoots and roots under low-P condition. Conclusion: The new insights generated on the maize metabolome in resposne to P-starvation and restoration would be useful towards improvement of the P-use efficiency in maize.

Figures

  • Fig 1. Principal component scores (PC1, PC2, PC3 and PC4) for identification of traits governing P starvation tolerance in maize genotypes grown under low (2 μM) P condition. The factor loading values for variables are indicated by red arrows radiating from the centre showing the direction (angle) and magnitude (length). Numbers indicate classification of 37 genotypes based on the factor scores of PC1 and PC2 (A) and PC3 and PC4 (B) principal components (S1 Table). Legend for variables: SL, shoot length; RL, root length; SDW, shoot dry weight; RDW, root dry weight; TBM, total biomass; RSR, root-to-shoot ratio; LA, leaf area; CHL A, chlorophyll a; CHL B, chlorophyll b; PN, photosynthesis; SPCONC, shoot P concentration; RPCONC, root P concentration; TPU, total P uptake; PUE, P use efficiency; AP, acid phosphatase activity.
  • Fig 2. Cluster analysis of maize genotypes based on the averages of 15 trait variables grown under low (2 μM) P condition.
  • Table 1. Biomass accumuation (g/plant) of 15-day-old maizegenotypes at low phosphorus (2.0 μM) and sufficient P (500 μM) treatments.
  • Fig 3. Principal component analysis (PCA) of metabolic profile of leaf and root of PEHM-2 (V1) and HM-4 (V2) maize genotypes under low P (2.0 μM) and its recovery and sufficient P (500 μM) conditions (S2 File). The PCA score plot distinguishes the metabolic profiles of low-P sensitive and low-P tolerant maize genotypes. 500 μM (open triangle), 2.0 μM (times), 3-day-restoration (open diamond, 3DR), 6-day-restoration (down triangle, 6DR) and 10-day-restoration (plus, 10DR). The first number in the data points represents treatment (500 μMP, 2 μMP, 3DR, 6DR and 10DR. Second number represents the genotype (V1 and V2). Third number indicates plant organ (leaf, S and root, R).
  • Fig 4. Metabolite profiles of leaf and root of PEHM-2 and HM-4 maize genotypes under sufficient P (500 μM) and low P (2.0 μM) and its restoration at 3rd, 6th, 10th day. (S3–S10 Files).Cluster analysis along with heat map showing changes of metabolite levels (log2) comparing leaf and root of low-P tolerant (PHEM-2) and low-P sensitive (HM-4) maize genotypes along with recovery samples. Red indicates increased metabolite levels, and green represents decreased levels (see color scale bar); Metabolites were arranged in the major groups of organic compounds: sugars, amino acids, phosphates, organic acids, sugar alcohols, polyamines, and other compounds. V1 = low-P tolerant (PEHM-2), V2 = low-P sensitive (HM-4), 500 = sufficient condition of P (500 μM), 2.0 = low P condition (2.0 μM), 3DR, 6DR, 10DR = restoration of low-P condition at 3rd, 6th and 10th day, respectively. The resulting heat map and tree figure was obtained using the Java metaboanalyst 2.0 software package. The metabolites indicated with red and green colours represent comparative metabolite concentration.
  • Fig 5. Differential metabolite profile in the leaves of PEHM-2 (V1) and HM-4 (V2) maize genotype under low (2.0 μM) and sufficient P (500 μM) conditions. The results shown are the normalized means ± SEs, and the means are the average of three independent experiments. Normalization was done with pooled control samples.
  • Table 2. Fold-change in metabolite levels in the leaf of low-P tolerant (PHEM-2) and low-P sensitive (HM-4) maize genotypes under low-P and its restoration conditions, when compared with sufficient P condition.
  • Table 2. (Continued)

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APA

Ganie, A. H., Ahmad, A., Pandey, R., Aref, I. M., Yousuf, P. Y., Ahmad, S., & Iqbal, M. (2015). Metabolite profiling of low-P tolerant and low-P sensitive maize genotypes under phosphorus starvation and restoration conditions. PLoS ONE, 10(6). https://doi.org/10.1371/journal.pone.0129520

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