In this methods article, I describe a computational workflow for cross-species visualization and comparison of mRNA-seq transcriptome profiling data. The workflow is based on gene set variation analysis (GSVA) and is illustrated using commands in the R programming language. I provide a complete step-by-step procedure for the workflow using mRNA-seq data sets from dog and human bladder cancer as an example.
CITATION STYLE
Ramsey, S. A. (2018). A method for cross-species visualization and analysis of RNA-sequence data. In Methods in Molecular Biology (Vol. 1702, pp. 291–305). Humana Press Inc. https://doi.org/10.1007/978-1-4939-7456-6_14
Mendeley helps you to discover research relevant for your work.