Random subwindows and extremely randomized trees for image classification in cell biology

  • Marée R
  • Geurts P
  • Wehenkel L
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Abstract

BACKGROUND: With the improvements in biosensors and high-throughput image acquisition technologies, life science laboratories are able to perform an increasing number of experiments that involve the generation of a large amount of images at different imaging modalities/scales. It stresses the need for computer vision methods that automate image classification tasks. RESULTS: We illustrate the potential of our image classification method in cell biology by evaluating it on four datasets of images related to protein distributions or subcellular localizations, and red-blood cell shapes. Accuracy results are quite good without any specific pre-processing neither domain knowledge incorporation. The method is implemented in Java and available upon request for evaluation and research purpose. CONCLUSION: Our method is directly applicable to any image classification problems. We foresee the use of this automatic approach as a baseline method and first try on various biological image classification problems.

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Authors

  • Raphaël Marée

  • Pierre Geurts

  • Louis Wehenkel

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