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Link-Ancestors: Fast simulation of local ancestry with tree sequence software

Bioinformatics Advances (2023) 3(1)
DOI: 10.1093/bioadv/vbad163
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Abstract

Summary: It is challenging to simulate realistic tracts of genetic ancestry on a scale suitable for simulation-based inference. We present an algorithm that enables this information to be extracted efficiently from tree sequences produced by simulations run with msprime and SLiM.

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APA

Tsambos, G., Kelleher, J., Ralph, P., Leslie, S., & Vukcevic, D. (2023). Link-Ancestors: Fast simulation of local ancestry with tree sequence software. Bioinformatics Advances, 3(1). https://doi.org/10.1093/bioadv/vbad163

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