SBMLtoODEpy: A software program for converting SBML models into ODE models in Python

  • Ruggiero S
  • Versypt A
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Abstract

The SBML (systems biology markup language) is a standard exchange format for computational models of biochemical networks. We continue developing SBML collaboratively with the modelling community to meet their evolving needs. The recently introduced SBML Level 2 includes several enhancements to the original Level 1, and features under development for SBML Level 3 include model composition, multistate chemical species and diagrams.

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Ruggiero, S., & Versypt, A. (2019). SBMLtoODEpy: A software program for converting SBML models into ODE models in Python. Journal of Open Source Software, 4(41), 1643. https://doi.org/10.21105/joss.01643

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