BioBlend: Automating pipeline analyses within Galaxy and CloudMan

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Abstract

Summary: We present BioBlend, a unified API in a high-level language (python) that wraps the functionality of Galaxy and CloudMan APIs. BioBlend makes it easy for bioinformaticians to automate end-to-end large data analysis, from scratch, in a way that is highly accessible to collaborators, by allowing them to both provide the required infrastructure and automate complex analyses over large datasets within the familiar Galaxy environment. © The Author 2013.

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Sloggett, C., Goonasekera, N., & Afgan, E. (2013). BioBlend: Automating pipeline analyses within Galaxy and CloudMan. In Bioinformatics (Vol. 29, pp. 1685–1686). https://doi.org/10.1093/bioinformatics/btt199

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