On the transferability of the SPC/L water model to biomolecular simulation

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Abstract

We investigated the performance of the recently developed SPC/L model for liquid water, as a pure liquid, in binary mixtures with DMSO, and as a solvent model in a peptide folding simulation. Additionally, in order to test the compatibility with the GROMOS biomolecular force field, free energies of hydration of a set of representative compounds were computed. The results are compared to those for the well established SPC water model, which is generally used as a solvent model in conjunction with the GROMOS force field already for more than two decades. It turns out that as a pure liquid and in binary mixtures with DMSO the SPC/L model outperforms SPC, whereas as solvent in combination with the GROMOS force field both models perform equally well.

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Glättli, A., Oostenbrink, C., Daura, X., Geerke, D. P., Yu, H., & Van Gunsteren, W. F. (2004). On the transferability of the SPC/L water model to biomolecular simulation. Brazilian Journal of Physics, 34(1), 116–125. https://doi.org/10.1590/S0103-97332004000100015

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