Abstract
We describe various types of outliers seen in Affymetrix GeneChip data. We have been able to utilise the data in the Gene Expression Omnibus to screen GeneChips across a range of scales, from single probes, to spatially adjacent fractions of arrays, to whole arrays, to whole experiments. In this review we describe a number of causes for why some reported intensities might be misleading on GeneChips. © The Author 2009. Published by Oxford University Press.
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Upton, G. J. G., Sanchez-Graillet, O., Rowsell, J., Arteaga-Salas, J. M., Graham, N. S., Stalteri, M. A., … Harrison, A. P. (2009). On the causes of outliers in Affymetrix GeneChip data. Briefings in Functional Genomics and Proteomics. https://doi.org/10.1093/bfgp/elp027
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