Abstract
Summary: We present the web-based program CREx for heuristically determining pairwise rearrangement events in unichromosomal genomes. CREx considers transpositions, reverse transpositions, reversals and tandem-duplication-random-loss (TDRL) events. It supports the user in finding parsimonious rearrangement scenarios given a phylogenetic hypothesis. CREx is based on common intervals, which reflect genes that appear consecutively in several of the input gene orders. © The Author 2007. Published by Oxford University Press. All rights reserved.
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CITATION STYLE
Bernt, M., Merkle, D., Ramsch, K., Fritzsch, G., Perseke, M., Bernhard, D., … Middendorf, M. (2007). CREx: Inferring genomic rearrangements based on common intervals. Bioinformatics, 23(21), 2957–2958. https://doi.org/10.1093/bioinformatics/btm468
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