Elucidation of conformational characteristics and configurational properties of poly((R)-3-hydroxybutyrate) by ab initio statistical mechanics

Abstract

Conformational free energies and geometrical parameters derived from ab initio molecular orbital (MO) calculations for monomeric and dimeric model compounds of poly((R)-3-hydroxybutyrate) (PHB) were introduced into the refined rotational isomeric state (RIS) scheme to yield the characteristic ratio, configurational entropy, configurational internal energy, bond conformations and averaged geometrical parameters of PHB. The reliability of the MO calculations was confirmed through comparison with 1H and 13C nuclear magnetic resonance experiments for the monomeric model compound. The characteristic ratio (5.60) derived from the refined RIS calculations for the unperturbed PHB chain at 25 °C is in satisfactory agreement with the experimental values (6.1-6.3). The crystalline PHB chain is known to adopt the ttg+ g+ conformation in the repeating unit. A previous study revealed that a trimeric (R)-3-hydroxybutyrate substrate bound on a PHB depolymerase lies in the ttg+ g+ and tg- tt conformations. In our MO calculations, the former conformation is the most stable, and the latter is metastable but further stabilized by intermolecular C=O···H-N and C=O···H-O hydrogen bonds on the enzyme. © 2013 The Society of Polymer Science, Japan (SPSJ) All rights reserved.