Genotypes and transmitted drug resistance among treatment-naive hiv-1-infected patients in a northwestern province, china: Trends from 2003 to 2013

Abstract

Methods: Blood samples from 372 HIV-1 treatment-naive patients were collected between 2003 and 2013 in Shaanxi province. Viral RNA was extracted for nested PCR, and phylogenetic reconstruction and recombination analyses were performed to characterize patterns of the HIV-1 subtypes. Genotypic drug resistance testing was performed using an inhouse assay to determine trends in the prevalence of HIV-1 transmitted drug resistance. © 2014 Zhao et al. Background: Transmitted drug resistance (TDR) reduces the efficacy of initial antiretroviral treatment and has become a public health concern. Little information is available regarding the genetic diversity of HIV-1 and the prevalence of TDR among treatment-naive patients in a northwestern province of China since the implementation of national free antiretroviral therapy (ART). Results: Multiple genotypes were identified among the patients in Shaanxi, including B (25.0%), C (0.3%), G (0.3%), and CRF01-AE (39.2%), CRF07-BC (32.7%), CRF08-BC (0.8%), CRF55-01B (1.1%), and URFs (0.6%). The subtypes were associated with the transmission routes (x2 = 77.113, p<0.01). In this study, a low baseline CD4+ T cell count and a high viral load were found among CRF01-AE-infected patients compared with patients who were infected with non-CRF01-AE (p<0.01) through sexual transmission; however, the CRF01-AE subtype was not associated with a low baseline CD4+ T cell count or a high viral load in Chinese patients infected through blood transmission (p = 0.249). The overall TDR rate in this population was 4.4% between 2003 and 2013. A univariate logistic regression model revealed that a low CD4 T cell count (<100 cells/ μL) was associated with the development of drug-resistant strains. Conclusion: Our work revealed diverse HIV-1 subtype distributions in Shaanxi province. We identified a low and stable TDR time trend among ART-naive patients. These findings enhance our understanding of HIV-1 genetic diversity and provide some guidelines for the improvement and implementation of a comprehensive public health strategy of HIV-1 TDR prevention.