Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit

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Abstract

PRALINE 2 is a toolkit for custom multiple sequence alignment workflows. It can be used to incorporate sequence annotations, such as secondary structure or (DNA) motifs, into the alignment scoring, as well as to customize many other aspects of a progressive multiple alignment workflow.

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Dijkstra, M. J. J., Van Der Ploeg, A. J., Feenstra, K. A., Fokkink, W. J., Abeln, S., & Heringa, J. (2019). Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit. Bioinformatics, 35(24), 5315–5317. https://doi.org/10.1093/bioinformatics/btz572

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