BactoSim - An individual-based simulation environment for bacterial conjugation

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Abstract

BactoSim is an agent-based platform for simulating the conjugation in spatially structured bacterial populations, which are the conditions typically found on naturally occurring colonies such as biofilms or in agar-based laboratory cultures. The model provides a set of key indicators which can be visualized in real time as the simulation evolves and saved as for further analysis.

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García, A. P., & Rodríguez-Patón, A. (2015). BactoSim - An individual-based simulation environment for bacterial conjugation. In Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science) (Vol. 9086, pp. 275–279). Springer Verlag. https://doi.org/10.1007/978-3-319-18944-4_26

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